NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24721J44947_10111111

Scaffold JGI24721J44947_10111111


Overview

Basic Information
Taxon OID3300002966 Open in IMG/M
Scaffold IDJGI24721J44947_10111111 Open in IMG/M
Source Dataset NameHot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.611006Long. (o)-110.440182Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025877Metagenome200Y
F051554Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
JGI24721J44947_101111112F025877GAGGMPGIDETTNTFRYRVQDPDKFDKFRVKPITQGVKITLGRVKGTNRWEIQSYIFDKTRFKDKESVREWLEKHLKSELQLLLDFKAWNELRMRFLKAYLDISRID*
JGI24721J44947_101111114F051554AGGTGGMQLRYYVPFKAVQSADQKEAQFPIKEQLVVIEGVAIDTSVNKNKWQVPKEDLEYIVETLKGAQLRVDHAESALMVVGKVVDASLDGDRVLFRAEVGDERLIDKIIRGYVTHVSIQVDSDEVECSKCKRPTRKEGRLVHLCPGAWEVVRKPKVRELSIVASPAYENTSFQPLGFYAAMNEAQWGAIIESLTKSGVLEPSPSQSSVSPDDNVGSK
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