Scaffold G310J44882

Basic Information
Taxon OID	3300002933 Open in IMG/M
Scaffold ID	G310J44882_10003108 Open in IMG/M
Source Dataset Name	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300002933 Open in IMG/M

Scaffold ID

G310J44882_10003108 Open in IMG/M

Source Dataset Name

Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	6481
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6481

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F015062	Metagenome	257	Y
F016247	Metagenome	248	Y
F036080	Metagenome / Metatranscriptome	170	Y
F051683	Metagenome	143	Y
F058718	Metagenome	134	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000310811	F012096	AGGAGG	MSTWLIAAMGAVYFYIACEQFWKGSIGTGIMFLGYAIGNIGLVMVAK*
G310J44882_1000310812	F058718	AGGA	MQVICYDTEFDVPDLLIDQFMKDFDGLPGGKHREGVMQIRGSIEEILDIVADDPELLYEPEYQTDFIRALAMKQALGELGLLYDS*
G310J44882_100031082	F015062	N/A	MKTKTKHKINAIAPRLSDEDIDPLEKEDSVEPNPPILEGWLPWNPEDVSDIRRMISDVLPTKQQFVLEAFLDGLNYADVGVTEKYWRYHFFKGVEFIKKELKL*
G310J44882_100031083	F016247	AGGA	MTHFIVEHNYRGSYVMETICGVEDIDTSMYKDLLGLWVCDSQEELQIMEKQLKELRHARSGQPS*
G310J44882_100031085	F051683	AGGAG	MKIEIDDDFADEITRDNLAQSYVSVSSMMKNADAWHEDDVTSWEVLLPALKIVGGWYSVNFDADIKKAKKRMNK*
G310J44882_100031086	F036080	GAGG	MNPKIDLESAIMLAWQTSEDINLLFKHYGDHPVPMSEDDVLNALLGIKTLHDMRCESLMDMYCQKMELNQYCTDPKQLEARYEMFGIKQPKKGSKK*
G310J44882_100031088	F083731	AGGAGG	VNLKQLLKHAGISNNIIKEVERKAERTNAQKEQEHQEKALAMTKMMLNDALRYRREHGDKTPPSAPKKTIILPGDF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold G310J44882_10003108

Overview

Ecosystem & Geography

Associated Families

Sequences