Scaffold G310J44882_10000339

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold G310J44882_10000339

Scaffold G310J44882_10000339

Overview

Basic Information
Taxon OID	3300002933 Open in IMG/M
Scaffold ID	G310J44882_10000339 Open in IMG/M
Source Dataset Name	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	23278
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (80.56%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010592	Metagenome	301	Y
F046794	Metagenome	150	N
F068376	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000033911	F010592	N/A	MSAYKPFSQYLHDVFDGPARKVVSDWVKMKWGLDVKDNPNKYGVDLICFRSDSPVGLLEVEVRQAGFDRHQTIHVGQRKDKLFQEGLPTLFFAVTQDLFRAYWVKADLIANCPLIEVHNKYVTKGEMFYDCPIQMFKIADLTQLF*
G310J44882_1000033912	F068376	GGAG	MATNFKIEGKEHKSPKGHYVKESPHRVEKEVERLERKLDKHIALPMEKAHHAESSQKEAPLPNMRKY*
G310J44882_100003392	F046794	AGG	MSCKSCKFFVFNQNDMMGACKLNPVVVNKMPSDWCGQEIPAQYEVEIVPAAPIEFVYNETQAVYDINTDEVKPKRGRKNAREQK*

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