NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_104887

Scaffold Water_104887


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_104887 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2059
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019141Metagenome / Metatranscriptome231Y
F027157Metagenome195Y
F033429Metagenome / Metatranscriptome177N
F063588Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Water_1048872F019141GGAGMSKIKEQLIGYEQSDWLSDDDHVRITEVEEYLFYAMTVAEMQQAARQHIRHDLYTTSKEDFDRIHYDTIGVHTK*
Water_1048873F063588AGGAGMQFNVAGMFLNIEPRFGIGLDIESVESRPVWTLQDGELSTMAFDGLVLLLPFFIVTLGNVWTEAEEE*
Water_1048875F033429AGAAGGMITDNTTENDLLAETIEELGQSLTELQLVINDIKEQVNYRTEDN*
Water_1048877F027157GAGGMNYTEFKKQHDKLVTDIVFTESRIFHWQIERLVDRLERLRLDNEKHFNQLLRAL*
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