NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_102819

Scaffold Water_102819


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102819 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2926
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F024541Metagenome / Metatranscriptome205N
F063642Metagenome129N
F090273Metagenome / Metatranscriptome108N
F091789Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Water_1028191F024541N/AMEFFDMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHNEHREAKV*
Water_10281910F090273N/AMKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQSISKMQSHLSFLTFDQIRRALSKLEKEGVIYRQGNGFDRR
Water_1028194F091789N/AMIDWYNFHCRTWREAKRNWGHMMQDKGLQQINRDAPTGYGEAPHLITSKVEGFGFVIYPHGYDPREINHTLSSRASIYGNRYCGSLNSF*
Water_1028196F063642N/AMEYTSTQLFDEVIQLATPDCIKRRDMTVIRKIKDLQNYTQRLEQIAEDAIATLKEKNA*
Water_1028198F015079N/AMVQAQIESIQGKGDWKGRHGTMYTFEIAFNDGTVGEANAKTQEPPYKVGDEVYYEIKSDDQYGKKLKVSKNPPPPGGFQQFQPAKQDPDKDKKMIRGMCFKVAGMAWANQYKHKQFDLPHSVMVKGVIALAKEYEQAYNEWMEE*
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