NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_102654

Scaffold Water_102654


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102654 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3052
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N
F020173Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Water_1026543F005590GGAGMTEHMTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEVLRKEIKRCLSRHSELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAF*
Water_1026544F009460GGAGMAKWDLSKLENSASVGAHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKRL*
Water_1026547F005843GGTGGMTLAEPVFMAFAVFSSADECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQENGQ*
Water_1026548F020173N/AMICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEEE*
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