NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_102279

Scaffold Water_102279


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102279 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3340
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F002135Metagenome / Metatranscriptome590Y
F007522Metagenome / Metatranscriptome349Y
F019825Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Water_1022793F000141AGGAMHPQFKCNGCKAKTEFLWLEQLDTPEGFKAYQCMSCGCVGVKNIAEALHIPDSSIDRCTKCGGWQFLGSGCHTCALIGAK*
Water_1022794F019825AGGAGGMGYIEILRGGPYLERIENDQVKFIPSNDLCIACNDDRLIHSGNYLICTQCHTRQ*
Water_1022797F007522AGGMDLKEAGLLWVAIMVAITVLYGMYDNAKQTHYWRGRKDGWDMHRRMIDNKTNANNN*
Water_1022799F002135N/AMANTRKRKKINRRVVRKSPDPLSKLEVFYIAKHEMYKAARKAGFSEPIALALLDSASSMPDWVVGDNGIIPSIPTPEEDED*
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