NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Water_101615

Scaffold Water_101615


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_101615 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4130
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F003067Metagenome / Metatranscriptome509Y
F010307Metagenome / Metatranscriptome305Y

Sequences

Protein IDFamilyRBSSequence
Water_10161511F010307GGCGGMSNITQFEVTTSYGEVIQHIVIDRGNGEYTSMLKSTYDEQQAALSTPIVSSDE*
Water_1016158F003067AGGMTQAQSYIALAVGIAALGGTMAGLVRHLVKYYLAELRPDNNGGHNLRGRVDRIETRVDEIYKLLLERS*
Water_1016159F002269AGGAGMNEQVKAAGLSYIRAALSCVGALYLSGITDPKVLANAFIAGLIGPLLKALAPTETQFGIGKK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.