Scaffold Water_101345

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_101345

Scaffold Water_101345

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_101345 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4643
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cattleya	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F030331	Metagenome	185	Y
F051640	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1013452	F051640	AGG	MGRLVPRDGFAREVEIKRQSGSKVLRAGKNGSYSVDNPKDIKALKSEGFTEGNLALHTHGDSDRGYTCINCGFGSWFKLCSRCGHESSAPKTDGD*
Water_1013454	F002722	AGGA	MAVGRTQLRSTLYNYLVGASISTLNQIFTSFPKRINFQVNAQPGQLSRSACVIFIQSERETRLAIGGATNGWKRVDFTVVLQLFHHSVQNNAEDAMTDFDTLVDNIKNTLRASHNFGDTTQVNVWQGAEPAIDALYGEPVTSDNGATETWAEIQFDVTQMIQA*
Water_1013457	F030331	AGG	MSKKITLTSGATVTIKDANDLKVKDRNRIMRAGDKDTSAEKGIAIGNALLSAIIEEWSYDLIVPSVKEDSIEELPIKDYVELMKQTEDLTKDLFPDLADTDKNRTNPDSPLEDSKD*

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