Scaffold Water_101097

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_101097

Scaffold Water_101097

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_101097 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5252
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004639	Metagenome / Metatranscriptome	429	Y
F025974	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1010971	F025974	GGAG	MPNPTRIEINCETGVESIIELTDAEVAEMTYEAELAAEKKAEADAQAEADATAKAALLVKLGITADEAKLLLA*
Water_10109712	F004639	GGA	MGHIQFLNQDGEWESFPNEEQEINLRANAELLEELGYKLICQLCNKFPTRTQIRQRYLKHEWTCEACGTVNSAGRA*
Water_1010973	F002934	AGGCGG	MNMKNPAILSVGAFLAVWGTTSNFALDYRAVLGSIVAGVFGYATPRK*

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