NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_101007

Scaffold Water_101007


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_101007 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5537
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F014505Metagenome / Metatranscriptome262Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Water_10100711F013704GAGMDFKRKMNNGQRFEISGMEFICIETHAYLQTRLDDEESDIDVGSSYYIVRNTSTGKLHQIPFQRIIDKEKEITWKI*
Water_10100712F012872GAGMDLHFEGNRLYYMEKESELYKALDHLSKELSDQKTMTKEDMWEVFQILADSAAVYRHITDYFTTLDKLILDARIENGKLKQEMYDLKKENHRLNEMLNREMDGF*
Water_1010076F016957N/AMQLRKYLKEGRNLSDDRTAICVDVGKSGEALFKELTGAHKSSLADDKKHIDFYWGDMKVDVKGLKKMHHSGYILLEFINVWGGHGWCSRKSKAEYIAFQFPDAFYIFRKNHLRRRALDLCEEFDRSKILRKNWIPYQEAMYKWVGRYNAQDVFTYLKIEDVEDLIFEILPYKIKEG*
Water_1010078F014505N/AMGRIEIFYRKNFKRLTGFIKEYTDGSYEIASDIVQMVFLRLLELESEGRTNFYEEDSLNFFYVYRSCINTALKYQRAKKKINKVSLEDFDVEDYQPYPEEKAALEKLINIMEDEMKELHWYDEKMIRIHMEGTSMNKIHRDTDIGLTSIKNTIKNGKARIHDRLREDWEDFGNGDYDKI*
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