Scaffold Water_100829

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_100829

Scaffold Water_100829

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100829 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6104
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → Candidimonas nitroreducens	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F064498	Metagenome	128	Y
F065546	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1008294	F064498	AGGAG	MKRKRWVYKVFYANRFVAQFTSRKAARHFMENMTDLDLPFLITPDIANQTAYMIGEVK*
Water_1008296	F065546	AGGAG	MTVMTEQQIVNARLLTLRAMLKLEMKGMTRSRAPSAYSMLKSMGYKGTREAVLATLDKQREEILTGVIASEA*
Water_1008298	F006696	GGAGG	MNFFRFLKQYWRDLTPLEVVTRELALAHLERLDAEGAVEYAQAVLEYNERRIERLNLRIKEYK*

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