Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100657 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100657 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6931
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (28.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6931

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (28.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009856	Metagenome / Metatranscriptome	312	Y
F024541	Metagenome / Metatranscriptome	205	N
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063642	Metagenome	129	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10065711	F091789	GGA	MIDWYNFHCRTWREAKRNWGHMMQDKGLQQINRDAPTGYGEAPHLITSKVEGPGFVIYPHFYDPREINHTLSSRASIYGNRYCGSLNSF*
Water_10065712	F024541	N/A	MEFFDMIISQYGSVHKCAAKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHNENT*
Water_1006573	F042877	N/A	MIEGILVAIAILTFAQVGAEYYQEHQVRLFNLVVLLLSCLALFV*
Water_1006574	F072209	AGG	MVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFVAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHSGTREERKAILVTVEDLIDLGQIKPPE*
Water_1006575	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGLREMSEYLPFLTVPQIKGALRKLEAAEAIYREPNGFDRRRTYCLGTKLSNRKDQTIPSKGQNGLIEGTELSRVHIETNTSKRTKKDAREELEYQRPTEEEVIEYMEDRGAHELAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNERRKGFNPAGFTPDGLKDFIANG*
Water_1006576	F048232	GGA	MLNAESLPYEERVSRIMFLREHRRNLLRAYCEDDVTKKEKDKLRQEIARVQKALKKLDPDGMFPP*
Water_1006579	F063642	N/A	MEYTTTQLFDEVIQLATPDCVKRRDMSLVRKLKDLQNYTQRLEKIADDALDILKDKQS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100657

Overview

Ecosystem & Geography

Associated Families

Sequences