NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100559

Scaffold Water_100559


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100559 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7643
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002934Metagenome / Metatranscriptome519Y
F063483Metagenome129Y
F074577Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Water_1005593F063483AGAAGGMDHYLIGMGLLGSLVGFLVGYAKGHEHGKIAGRIALRKTLRQLEQVGR*
Water_1005595F074577N/AMARKRPVIDLETYSALDAYAIALNEYYKSLRKAGFSETHAFWLLSDRETFPDWIIPNLPDRIDNIPYEDDED*
Water_1005597F002934AGGAMNLKNPYVMSVGAFLAVWGTTSNFALDYRAILGSIVAGVFGYASPKK*

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