Scaffold Water_100543

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_100543

Scaffold Water_100543

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100543 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7775
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005200	Metagenome	408	Y
F017817	Metagenome / Metatranscriptome	238	N
F030650	Metagenome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10054312	F005200	GAGG	VDPITIFAACKAAHAGIRECIDLYQDFKKDGKDVGDIVGDIGKNLGAFFTHQEAFKEAEKEAKKNPLPKNISINEEAMNRILRQQQLEQMETDLREMIIYQIGMPGLWSKFVEMREVVRKEREKVEREQKKPWSWLLSKDGNSSTNGKFVHRYLLAALSS*
Water_10054316	F017817	N/A	MTKKKQEKGINPKLEEAINLLMTQVMADPEATIIDKTRIIDRALKLEALKMKDEDSAWGQGFVLDDDDDT*
Water_1005436	F030650	AGGA	MDNKFEEKPGYAILFYTAPENKKFEQSPDFDGSMILKMDYKAGERIKFDVWQKETRNGKPMLSVKENTWAKEKNMEKDRPKEVTPTYRQGPKTNYRKRDDDDSIPF*

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