| Basic Information | |
|---|---|
| Taxon OID | 3300002930 Open in IMG/M |
| Scaffold ID | Water_100326 Open in IMG/M |
| Source Dataset Name | Estuary water microbial communities from Pearl Estuary, Zhujiang, China |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10607 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pearl Estuary, Zhujiang, China | |||||||
| Coordinates | Lat. (o) | 22.67 | Long. (o) | 113.71 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Water_10032613 | F001991 | AGG | MAIFNKNTLTQVSGFDNPIIAGELVYQQATFWNLAFTTADTPVDLTGATISAQILRRQISNLQDTRYGLSFDIADYTASTPTPVTLTITNRVNAAGTFTLVIDESAWSVISTDPQLDINATSPVGFSGRIKISFPATGTNPAQDSIIFLLFLVRSDGVVN* |
| Water_1003268 | F000934 | GAGG | MSLNQILAISETCGINDHRFVGQMLSRNQRISTSEILTVVPFEFDLKPMNYLLYSKNRDLLSSLRVPDKALEQYLNFGSTGWLNYIQYQGDMSSSQISACAWQTTSANKTLVLGSLPSISSGAYIVKAGDFCQVERYSYIATADVVRGSGSTVDIPVHRNLIVTLTTTVAAVIGQYGTTISMGGATYTGITFPVILRDYPTYNLVPFTNDSFIQWSGGFKAFESVL* |
| Water_1003269 | F002085 | N/A | MNVITPVVGTNNIRYAHFVRVTIPATSTTPLTVYRFASTPSALTIPAVDSEPFGALGQLIKVGDAQKDIKSTANETTFTMVGIDTAMLGWVLSQNIKGSQIETWYGFFGTDGALITTGGSGGLYQFFNGYVNSFSISEQWMEEIREFVGVITVSASSIQLILKNRIAGRFTNDNNWQYFNAGDTSMTRVAFISNINYYFGKGASPNS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |