NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100237

Scaffold Water_100237


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100237 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12536
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F023293Metagenome210Y
F039032Metagenome / Metatranscriptome164N
F055425Metagenome / Metatranscriptome138N
F057197Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Water_10023711F039032N/AMVTLSEVDHKIDAHVDVCAIRYEGIEKETRGIHARIKRLEQILITGGGAIIMMLLTMLMKVH*
Water_10023717F057197GAGGMTDFAAWRYENLVQFAKESTERMNLLNAEIEALNADLKAAINAYRDLLRRDTLGFFEATHTAEAEKAGE*
Water_10023719F019099GAGGMIVKRKFIKDWDKSQISTGYQRPNQFRIITWDMGRIQSWLLGKQPLARTLLEKVIR*
Water_10023720F023293GGAGGMKYGILDDEGNVIRWVWFAPPYPHVAVKVPRPRKPKLDLSQVPDAPF*
Water_1002375F055425N/AMITNDEKLASAVMNAYYREMEIHAYQVNIDNYSAMLLALPSEDWPQDWVAFKGVKIDELPHSLSDDDAQAISDYQYRDRLRSLIRTERAEQSKTIRIRDVLKAQIGDSYEAQILAYKATQP*
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