NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100206

Scaffold Water_100206


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100206 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14128
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015857Metagenome / Metatranscriptome251Y
F093169Metagenome106Y
F098563Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Water_10020612F093169GAGGMMDYSCPMPSTLGILEPMNPMRPQQYNSYVGPLVASDWNVPVHDMGYNYQVSEPTGGRILNGIPEAMRVFDAVDFLFPV*
Water_10020620F098563GAGGMAEILRKMTLKSLGLTETNLKAIVDASGGHGCAVANIVGKITGSQPGQTALGEYVKLVGQFYGLNLDTGEAFEASTCLLPNFISDTLVGALDKSDEVEFGIQVGVKGAKSATGYEYTCRPLIESKPSDAMQKLISIAMATTPKALAA*
Water_1002066F015857GAGGMNGQSTYSISDIESFASKFYQGRPLLLTPYAYVLTFSSLAAAGSATQTLNITANADFIFTMMHHRASVNGAAQTVSTKTAPLVRILITDSGTNEQFTNAAVDLENYSTNGNIVNDLPYPRIVSGRSTLTVQLSSYEASNTLNIDLSLEGVLVRAFTS*
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