Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100146 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100146 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16544
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (34.48%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

16544

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (34.48%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F029927	Metagenome	187	Y
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063642	Metagenome	129	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10014616	F009330	AGGAGG	MTLDRYLARNYEDLSQAAQRIAGRDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTIIEERLSELPWFDAEVFAIYFEDGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDRGGNKGDGDR*
Water_10014618	F042877	N/A	MIHGILVAILVLTFAQVGVEFYQENQVRLFNLVVLLLSCLALFV*
Water_10014620	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEEVEAIYRKPNGFDRRHTYCLGTIPYHAWDKTEPSISQNRTIDGPNLDRVHIETNTFKRTESNAREELDFQRPTEEEVIEYMEDRGAHDLAATLGPSFWNYYEANGWMVNGTPIAKWKPKANQWINTERNKRSNDRRKGFNPEGFTPDGLKDFIAHG*
Water_10014621	F048232	N/A	MRTDITYEERVARIMFLREHRRNLLTAYCEEGVSKKEKDKLRLETARVQKALRKLDPDGMFPP*
Water_10014624	F036970	N/A	MTKYREWFAAVNRAIVAEMAVQKKTQRQLAEELGVHVVTMNRKLKDPGLFTVGELGQVCESLSINPQNPQTYGTGAN*
Water_10014625	F063642	N/A	MQYTSTQLFDEVIQLATPQCVTNRDMTLVRKLKDLQNYTQRLEKIADDAVEILKEKS*
Water_10014627	F091789	N/A	MIEVFPFRRCKTWQEAKEEWGWLMRDKGLQQINRPPAIGYGEAPDLVTSKVEGPGFVIYPNGYDPREINHTLSSRASIYGEGYCGTLNPF*
Water_10014628	F029927	N/A	MKPVNTKSLFHVLCTTLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLESKNFDSLPE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100146

Overview

Ecosystem & Geography

Associated Families

Sequences