Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100132 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100132 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17473
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (21.62%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

17473

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (21.62%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F015079	Metagenome	257	Y
F024541	Metagenome / Metatranscriptome	205	N
F029927	Metagenome	187	Y
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063638	Metagenome / Metatranscriptome	129	N
F063642	Metagenome	129	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N
F097254	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10013210	F029927	N/A	MKPVNTKSLFHVLCATLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLESKNFDSLPE*
Water_10013211	F091789	N/A	MISVPPYRCKTWSEAKREWGWLMRSKGLQQINRNAPTGYGEAPDLLKGKVEGLGFVIYPRDYDPREATHTITTRSPIYGNRYCGTLNPF*
Water_10013213	F063642	N/A	MEHTVSPLFDEVIQLATPDCINRRDMTLVRKLKNLQEYTVRIEKILEDAKSIIEDHAK*
Water_10013214	F036970	N/A	MRIFCIYPNLFLIFAQIKHNTMTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDTLNIDLKNPPNYGTGAN*
Water_10013215	F015079	N/A	MVQAQIESIQGKGDWKGKHGTMYTFEVAFNDGTVGEANAKSQEPPYKVGDEAYYEIKTDDQFGKKLKISKNPPPPGGFQQFQPKANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVITLAKKYEKAFNEWMEE*
Water_10013216	F048232	GGA	MSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKNKLRLEIARVQKALKELDPDGMFPP*
Water_10013218	F072209	AGG	MASRTLSLTDSTQLLLKGDSRNLTPQNAWEEGTNIRTALRLNPQMVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHAGTREERKAILLTVEDLIDLGQIKPPE*
Water_10013219	F042877	N/A	MIHGILVAIAVLTFAQVGVEYYQENQVRLFNLVVLLLSCLALFV*
Water_1001322	F001668	N/A	MATVYLPVEPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDITKFYYPRITHPETGQVAIVGDTTEEVRISPEVDLTDMLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTQEEAEALGWLPDPIEP*
Water_10013221	F009330	N/A	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDRKADEGDGNR*
Water_10013222	F097254	N/A	MDPTDVTAFEELLPAIKSGRLNRAESRTMYDIFNRTFNAKERPCSCTGKNKRMVDQLQRAYEYSCR*
Water_1001325	F063638	AGG	MLDTLDTLTAVIDTVATVVTDPIILDPMEPWYVTHYVELIFIVLAATKAVLNLVPSEKPLVIFGYLDTLIGLIFKDRRK*
Water_1001328	F024541	N/A	MEFFEMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVKWEFRYHKENTNA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100132

Overview

Ecosystem & Geography

Associated Families

Sequences