NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100075

Scaffold Water_100075


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100075 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23113
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001153Metagenome / Metatranscriptome764Y
F012352Metagenome / Metatranscriptome281N
F036708Metagenome / Metatranscriptome169N
F047386Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Water_10007512F036708GAGMRTQLKVMPSLQRKIDGLKALAEQQVERKLIDMAVDAVGLGTIRVPVDTGAYVTSFSFNVGAGRPRGKSSKNKPKANEQAARNEGLSNLTQDLERIPSLLDTTRIELRNNSPHANDVERGEGWPKTNGYFVFTQLKRKYKRG*
Water_10007513F012352AGGMAFSRGYNLLKMVEEFGEPLTLRKKTTAGTYDPTTGSVTGSATTDYSFEGYFYNYDQGIIANVDEIRRGTRKCVVPALGLAVEPDDEDQIIGNGDTVNVISVVTIFSNGVKLCFLCDVRE
Water_10007515F047386AGGMIRQENMPFQIDRPVFVKHPFQSWGRQLKKGEEFKWKEIGVTEEKALILYTQGFIHHNSGFEVELKVGDGLEQLDVAGLHGLVDSINEKVNSKTKSDAEFQKKKCKKSKIVDKQRGLIRSWRRNYGHMETN*
Water_10007524F001153AGGMSIHDKIPYSEVIAKKVREGIRSGVSVKDILSSIQKYQNAPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALEGDFKSQELFLRSKGGWSPTSTVNEVDQVEDPDVDESAIDSLMNLLGKTRDNSAST*
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