Scaffold Water_100048

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_100048

Scaffold Water_100048

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100048 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28450
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (74.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017287	Metagenome	241	Y
F027764	Metagenome	193	Y
F035159	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1000482	F017287	AGG	MDTYVRRVFEGEAPCDKCDQAQACQDNEWACRAFSYYVLHGTFQNFTVRMPTKELFNKIFKEDDKALKNYLKSIAAKGQNALFE*
Water_10004828	F035159	AGGCGG	MFQTAFQPTAFQNDAFQIVITPVNPRGQGGDDAPWTREELKRYKAIQKKLRQAEEKRIAALKADQESRKQAIADLVDPPKVSKRKQNNIQSNQEVSVDIPSNLANIDRYIANLVKQQQDLQTAVAMRSAKLRLEQELAILEAKRQAELDDEEALLALIL*
Water_1000484	F027764	N/A	MRKCMQIQIEIVKENKDGSADALVHFDAEGLGILVEAGVISILREYIAQQKKTAKKGKK*

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