Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100008 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100008 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49744
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	71 (88.75%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	13 (100.00%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

49744

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

71 (88.75%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

13 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001094	Metagenome / Metatranscriptome	780	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F006653	Metagenome / Metatranscriptome	367	Y
F007691	Metagenome / Metatranscriptome	346	Y
F009331	Metagenome / Metatranscriptome	319	Y
F029046	Metagenome	189	Y
F034113	Metagenome / Metatranscriptome	175	Y
F082579	Metagenome	113	N
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1000082	F034113	AGGAGG	MALTPSYTTSTEATEVEQTYIDKGAVKMPQINPMVDAKYAAGKAQALATDKVEWPTKVAGLTN*
Water_10000832	F001094	AGGAG	MNKEKLIAIAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSAEFGRGSK*
Water_10000837	F082579	GGAG	MEDEVKYIHMTDEYAAQYWHQQGWLACRLAYKLYNDAQDAGAFRV*
Water_10000842	F006653	AGGAGG	MSEGQLTNKYRDNLKTDGLRADVDALKVDLTNFVGALLQSGIVELVKDEEGNVIYKINKVVLVDESVQQD*
Water_10000845	F009331	AGGAG	MMCDNCLKGGEENGLAHYKRSAHWHDKCDDKGCVCQHKTGPGYIKREGIKVPLMQTQSP*
Water_10000848	F003784	GGA	MYDNDRERVGHNATDFATYGLSHLAPRQEDSDNTHTPPASTPLVDHLAVIGYRSIGVSTEDLTSFIEAFASLRAMRVKGVGHSQYAIAQGQKFESFTTADTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Water_10000849	F004110	AGGAG	MAWAMTRIADHTEDLMEIDENKRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYETPKLGMLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPSEGGNLLANLIDIKRGYLQLEQDDQMLLRLRHHEGFTLQQIAQVLECATSTADRRCDKSLRRLQDNLGGISPWQ*
Water_10000855	F083901	GGAGG	MTQPTKSKSVLTYRTYRKARDRSLIRLSHLYPDTYKQLLAIERKFDEQEGKDWTGIDELINLSVGTHTRANGTPPFGDPADAGEDEGNYGGEA*
Water_10000856	F001477	GGAGG	MSNVISFHPKKSSLVLLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Water_10000858	F000821	AGGAGG	MNEEYLAAKANLCLNQAEKDLKQEEIVNAIKNLERANSALYRLGLVREGEADE*
Water_10000859	F003212	AGGAG	MKDKWLVTLEIDTYDGNPGDWDWEKLSTGLDAVKIISSEFKGVVRPLEKEEKYE*
Water_10000863	F029046	GAGG	MNLAEIDTLQDLKVWVKENMPNATVYEDMFGTLVIRTNLISTMGGYLHEKEAEDE*
Water_10000866	F007691	AGGAGG	MMDTLEQLINEIHEDNYSHLEFNENMGGEGCKCDIHTTLNTIVKYRDKEGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100008

Overview

Ecosystem & Geography

Associated Families

Sequences