Scaffold JGI25613J43889_10071318

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25613J43889_10071318

Scaffold JGI25613J43889_10071318

Overview

Basic Information
Taxon OID	3300002907 Open in IMG/M
Scaffold ID	JGI25613J43889_10071318 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	941
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F013101	Metagenome / Metatranscriptome	274	Y
F099804	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25613J43889_100713181	F000626	AGGAG	MPIVKKAPGIMTREVKLEEPVNELLEDYARFIESNADHVINAVIKKVLWRDQDYRKWREARRKAQLGPDKAHPIEARGRA*
JGI25613J43889_100713182	F099804	N/A	MSFSELPATVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
JGI25613J43889_100713183	F013101	N/A	FEKAKELFDSLVAIPLGSDVSAELLRYFQIRKAWDLGRYTSLSEADLIFRNQAKTRFGGQRFEHLYRGWKVARXSESDICREFGGSNRHXTVHFEAEVLCRFAVPEQEPEGKS*

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