| Basic Information | |
|---|---|
| Taxon OID | 3300002906 Open in IMG/M |
| Scaffold ID | JGI25614J43888_10006668 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3725 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Laytonville, California, USA | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000149 | Metagenome / Metatranscriptome | 1910 | Y |
| F000876 | Metagenome / Metatranscriptome | 851 | Y |
| F044131 | Metagenome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25614J43888_100066681 | F000149 | GGAG | MLLIAYYVIFMIAGDLAAYFIGLSVEYEWGSYASLIVFLVLYFLFLWVSWLLAVWM |
| JGI25614J43888_100066682 | F000876 | AGGAGG | MATPVVPSQFAVGKNRIVHKPTTATFNFDTGDTAFKSIDWGRAGEQSSSDPDYRKDDIMRVAQQLLSKLPR* |
| JGI25614J43888_100066683 | F044131 | AGGA | LLRAIDNYARGVFQPDDMRILVAAFDDAWRSLLASGVTFESDRESEAVRDGLAKHIIEQARYGERDQRRLRDGALLQYAQSNLKSKPPTRGSARRG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |