| Basic Information | |
|---|---|
| Taxon OID | 3300002854 Open in IMG/M |
| Scaffold ID | pct2_10000111 Open in IMG/M |
| Source Dataset Name | Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina - CMC-Pine-T2-ill-ass |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | INDEAR Instituto de Agrobiotecnologia Rosario |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 201625 |
| Total Scaffold Genes | 200 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 164 (82.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Lignocellulose-Degrading Enriched → Lignocellulose-Degrading Enriched Microbial Communities From Concordia, Entre Rios, Argentina |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Argentina: Entre Rios | |||||||
| Coordinates | Lat. (o) | -31.372253 | Long. (o) | -58.116672 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006009 | Metagenome / Metatranscriptome | 384 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| pct2_10000111122 | F006009 | AGGAG | MTNAEQKMLKRGVAAGTLMGLALGGIIALFIALRPDFFAALLL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |