NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig_10002

Scaffold contig_10002


Overview

Basic Information
Taxon OID3300002845 Open in IMG/M
Scaffold IDcontig_10002 Open in IMG/M
Source Dataset NameStormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21604
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location NameWilliamsburg, VA
CoordinatesLat. (o)37.270661Long. (o)-76.7142Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013502Metagenome / Metatranscriptome270N
F062715Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
contig_1000218F013502AGGAMALFKCNRTGNVVEFSFDHDIQEMRRHPEYTQIDDSSRVEVENEDGTRQTLVLRKPLGRPRKVLA*
contig_100023F062715N/AMLSEGKAEIQRIKKGVEDAKAIVKDVSGFFGWLKGLFGGSSSEPVKSVETKPEKAKKEEYVDYIPDEDAIVDQFIKHVGNFFKAQAYLVAYKEDLERKVFSSAHGDNNIGALELISIETKLVKCGAELRELMNEAPAQLGPLYSRYKAMYSRILDEQKKARERDRKNEKQKRIDQIKTENDRVDRCVPHWVTLGLIVIFWVFIWLISQSTMQKSTFGAWSYLQPSALSHFQPLPLSILRTELLQSRLSQIGVRMSN*
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