NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig_10116

Scaffold contig_10116


Overview

Basic Information
Taxon OID3300002844 Open in IMG/M
Scaffold IDcontig_10116 Open in IMG/M
Source Dataset NameStormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1738
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location NameUSA: Williamsburg, Virginia
CoordinatesLat. (o)37.251274Long. (o)-76.791915Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023572Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
contig_101162F023572AGCAGMGVQIMAYTPKAKRGLYYNINRRRAAGLPAKKRGQKGYPTKKAFQRSAETARR*
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