| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100222119 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2012 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| F007688 | Metagenome / Metatranscriptome | 346 | Y |
| F009396 | Metagenome / Metatranscriptome | 318 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_1002221191 | F007688 | GGA | MTANYKLDAMLELRKFLWQELYTREIFDKDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSY |
| B570J40625_1002221192 | F001900 | GGA | MLVQASSGLERLMGGSGPGGVLKDSTVAQVSAYVYYQANVIAKLTSSKQFQNTFTKTIFDQIEQDFGAYIDSLARSKPKSLHHVYEWKKTGTPSSRLFKLNKVSQQGLSFKVNYEFKMSRSMVPAPKGKRRHMFANKAFVMEQGLPLVIRPKNAERLVFESNGETVFMPKGASVTVKRPGGSAATNQFGLAYSRFFSGQLVNSSIKNSGFQRIFNSGLTKAMKLPVNIKKVQYKFSPNTVRSQADAALAVAFGSAL* |
| B570J40625_1002221193 | F001229 | AGG | MNDLIDSVLSMHLDVYKQSEVQDPDTGAIIREWSYYKTVSCHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTSERLTPREKVTNIRDNAGNVIWHEINFPSETPTVFEVMGTTPVTDPFGKVIAYNSSMKRSENQQIGQ* |
| B570J40625_1002221194 | F009396 | N/A | YKDLVLAEKYARKVIEQHTGQNFYLKDEIFVVYGHDSDILPLPSRVAEIYYLYARDILLLDNIEEINNWNYDVIVSESAYGIRINRASMLDNTVYTANGMVPPSINDYGNGVFQSGVPYRVYGRFGWEKVPDDVELAAIELMKDYFAKDTVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADKLLADYVLTTKVEII* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |