NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100064178

Scaffold B570J40625_100064178


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100064178 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4972
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003643Metagenome / Metatranscriptome475N
F008131Metagenome / Metatranscriptome338Y
F008357Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000641782F003643AGGAGGMTKDLKRNGLVEMQEKILAALASYGRHFLGAAIALYMTGNTDPSDLIKGGIAACLPVILKALNTNEPSFGFTKK*
B570J40625_1000641783F008357AGGAGMAGQKNFEVDQNTTFSFIVEYKDSEGNPIDLDGATAKLQVRDTKGGSKLAFSLTSPNGGIIIDAPNGKLTCKMTPTQTNKLFYPKSSYDLMITDSNLNKTKLIEGFLTLSRSVTI*
B570J40625_1000641786F008131GGAGMSVKRLVPLHAVVLDSDPITGRIGDIYYNNSEEELRYFDGSVWNPVGGAITGILEHIHTYDGAIFSVESIEVPASGVIDGGTP*
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