NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100003875

Scaffold B570J40625_100003875


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100003875 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28063
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F019997Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10000387526F019997AGGAGMDINTLKAAGATWLRASIAAVAALYMSGISDPKTLVNAFIAGLLGPAAKFVNPKDPSYGFGSK*
B570J40625_10000387531F016389N/AMPVIRKFAVQGHAIPSVVHAPRGPFPPEVLAEPEMAVDPSHSDSLHVGLDDIRFFKCRHCEVILIQEDLDDHICEE*
B570J40625_10000387534F012098GAGGMPKVHNIGPKHFVQLIDLPVIWGKKFVVRGWTQEIEEPFRTSEPFLVRLPKYKALAFGKWTGFKTEEDALKSALNTREVTYDDFTEEAGWTAPDSDREESLKDINARLDSVDGAVHVHDWQTYYRMAEESQQRPS*
B570J40625_10000387541F008023AGGAGVANTPTSPLDATGRAAETAAKKNAKAIQDRKDEISIAAQVEAESLENNVFDPKKPDAPLVLDEIENIGVTTANDSVVIRTITDIDEMTYGVGNHYSFKAGVKYRVPGHLANYLEELGYIWRPN*
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