NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100003076

Scaffold B570J40625_100003076


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100003076 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31254
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.90%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012966Metagenome / Metatranscriptome275N
F016969Metagenome / Metatranscriptome243Y
F035738Metagenome / Metatranscriptome171N
F068838Metagenome / Metatranscriptome124N
F077303Metagenome / Metatranscriptome117N
F099161Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10000307617F099161N/AMEKNKKLNDLKNKLSQLQDELETKDNNPIESNRIRREIEIVVKDIKREELKQPVSVERGKELFANMRKELGLDETISYKEFFDL*
B570J40625_10000307618F016969N/AMTKQEAEKKVYELTEKLIFVKKDFKDVAAGYKEKMKEIESEIKAIVEETSSLPLASSKDIEGDDE*
B570J40625_10000307631F068838N/AMPYFNIKSSPISFGQLNNIGLSVGNQSGTAASANEFYELEPAIVLDVILDETHPEIVNKRHLVDSRNIPQNYKGDQPTNRDIDYTYIGACKVRLCFSQQGLEKEKLSWAFPMESTGIVEYPLLNEVVIVVKYLDKLFYTRKLNLNGFVNQESNFRLESFYGNNTGNKDLVSDDDIKTESITGPKSLNAHKKIANNQVKGVLGSYFLSNSKIRKLRRYEGDTTIESRHGQSIRFSAYDNIRENDKGFYPDYKGDSTVNTPNEGCGNPMVIIRNRQRKLSLDKPIVVHPKLPLIPTITDSQKNVGGLIDEDINHDGSSIYITSGLTKSKWRTTCYKSIFQAGKEEQPLFSPVGSTAFNFDIENLKGDQVVINTDRLILSSRFGESLHFSKERYGIVTDSEYTVDAHDQIVMTTNNKTVFNSPAIYLGQYGQTNEPVLLGQTTVDWLYDLCNWLLDHVHWYNHTHPKTGGPNPDKTQETVQDKQLKFLRDNLDKLMSRRVFVTGGGYAPGVDGVTPEGFKNATEPVSVNIVSGEGLPGEFKGKLRREGPVEVQFEQV*
B570J40625_10000307633F035738N/AMKSNELKEIIRTVIKEELDKTLPTLIPKVLTEILSGKQSNVIQSNQINKTPVQESVQKPKEVKKYSSNPVLNEILNQTVVKIPNEGSIAGLDSNFKSQAFAGMQINETVETPQPVAPVTEEQGKVMNVLNRDFRSLMKAVDKKKQSGSIGSGMVSMG*
B570J40625_10000307637F077303N/AMSIQSQINDFLLTGQFTNNIDEFGNVNLYVSSSEANEQYIVFELINFNYKKDEIENLYDVNITEIQTETVVQKQVLDQTFLNEYNKVLSENQDLKERLNQLVDEVQSDPSKSQLSAARDLIVELRIKLKQGTKSEDFSDQFPFNLKSENE*
B570J40625_1000030768F012966N/AMKKLVLVLAALFAAASVTAEDTSSLTFDAGYNNQYIINGVSRAEGTAYAGFAAVKSLKYADVYVSGVLLPKDGIDQSHWTVGTGKGVKTFEWLTLRLDATATRHQAGGFGIKNSTEFGVKLEAQNPWLTPYVRGAYDINLEQAGVGAGVYHTFGLPFGFKATPSAEFVKFERYDAVTAKLNVSRPIGNFVPYAEVGVIDNNFSTAKYRFATEELTAEVLYSAGVKYTF*
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