NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100000236

Scaffold B570J40625_100000236


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100000236 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87921
Total Scaffold Genes135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F001968Metagenome / Metatranscriptome610Y
F002243Metagenome / Metatranscriptome578Y
F004314Metagenome / Metatranscriptome444Y
F027748Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_100000236109F000345GGAMTEEKKNWMQEWWDSDAYKKLQKETEEAKQRAVGKYFMLSESDKIDMLQAICYIMCKAESEGTSHRGLQDSLGVYPAGFWVSELMDVHNALWSYYHDQKREKELKSDLDALDDFIK*
B570J40625_10000023653F027748N/AMTYAQITASELSASEARVAIFDLADDFSWETVAREMISRMSGDEAREFVEDFISLYAD*
B570J40625_10000023664F001968GAGMFDELWSEIQDAPGEIFDLDIPELKDEKFDVNEYLNSNYDY*
B570J40625_10000023671F004314N/AMYDDYDLDYTFSNDYGQDLDEYYAQDALDLDEDYARDGQDYESLAYRHYA*
B570J40625_10000023689F002243GAGGMTTFPTLQSADGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYVETGDNSDLPQLGNPFHGAC*
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