Scaffold BMAI_1158500

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BMAI_1158500

Scaffold BMAI_1158500

Overview

Basic Information
Taxon OID	3300002822 Open in IMG/M
Scaffold ID	BMAI_1158500 Open in IMG/M
Source Dataset Name	Illumina_Fosmid_Bertioga
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1267
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Bathymodiolus platifrons methanotrophic gill symbiont	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Soil → Mangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes

Source Dataset Sampling Location
Location Name	South America Atlantic Tropical Mangrove
Coordinates	Lat. (^o)	-23.89694	Long. (^o)	-46.20778	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029006	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
BMAI_11585003	F029006	GGAG	MNKVIIALMAIYFIGDPGLQYLAWLGELKVYIVAAAIALVSMPWIASQLDG*

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