Scaffold JGI25136J39404_1009633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25136J39404_1009633

Scaffold JGI25136J39404_1009633

Overview

Basic Information
Taxon OID	3300002760 Open in IMG/M
Scaffold ID	JGI25136J39404_1009633 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1706
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25136J39404_10096331	F001606	GAGG	MTYGFDDVTFTSIGTGVAETQLNSGTSLSAPDPAHAFNAVVPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNISTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQALVANTVAPGVGCTVLYDTVSTNGVEQYYTRPTNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN*
JGI25136J39404_10096332	F001712	GGA	MAASAGQPIATRAQNFVNSLSGRITGYNPFPQTGTVPQTISIDGIFNKWSGIGLGAWIYGMLPVKQLPQKSKAKTLGKSLMTGGILGGLFSTGNPHNTNLLTPSRAITVSSSEVSYT*

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