| Basic Information | |
|---|---|
| Taxon OID | 3300002680 Open in IMG/M |
| Scaffold ID | Ga0005483J37271_109273 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF132 (Metagenome Metatranscriptome, Counting Only) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1509 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
| Coordinates | Lat. (o) | 42.471116 | Long. (o) | -72.17263 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012796 | Metagenome / Metatranscriptome | 277 | Y |
| F022716 | Metagenome / Metatranscriptome | 213 | Y |
| F036359 | Metagenome / Metatranscriptome | 170 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0005483J37271_1092731 | F036359 | AGAAG | VIRLSLYSNGSNVRYRKLESYQRHGGVDITKVHKLGENAKLKHNGADGVVLINQVIITISA* |
| Ga0005483J37271_1092732 | F012796 | AGGAG | MAALPLSHVCALLLVKQTWCQEGFPMKMNGQSRTFVKQVKLDLLALSDADLAQIIQQWVERSNLIEKSPDVAEETWFALGYSRELADTEALTQLGFNVSGSESEKPASWNAPDPQYLRTLLTAMDEQQFAQHVITLAFQSLHSIYPEWYDGLTFNAHLANYLRQINLKRRTMTIK* |
| Ga0005483J37271_1092733 | F022716 | GGAG | MKYYVTYCITHPEHTPMTSTGLVEARTRLDLEARLERGVVKWKKRGYSIEIVKVACIEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |