Basic Information | |
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Taxon OID | 3300002524 Open in IMG/M |
Scaffold ID | JGI24927J35514_1003837 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1364 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | Monterey Bay, California, USA | |||||||
Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005431 | Metagenome / Metatranscriptome | 401 | Y |
F013234 | Metagenome | 273 | N |
Protein ID | Family | RBS | Sequence |
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JGI24927J35514_10038372 | F013234 | N/A | MANIKYNKTIEKTILNRLCNGESIRKICKDPEMVSWATFSQKLKDSEKLQDQYYTCKKIGIEMVIAEAQDKLMDSINTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ* |
JGI24927J35514_10038373 | F005431 | AGGA | MMDFDDREKGYSAVIYIMESSNSVVVHFGGFNDLRECRYFSHHIMEDFGIEQLLNVPQGVTVH* |
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