Basic Information | |
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Taxon OID | 3300002514 Open in IMG/M |
Scaffold ID | JGI25133J35611_10014088 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_85 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3361 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 85 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F042574 | Metagenome | 158 | Y |
F046640 | Metagenome | 151 | Y |
F047913 | Metagenome | 149 | Y |
F062181 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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JGI25133J35611_100140881 | F062181 | GGA | MKVGDLVKLKYPRKPQHGGSGVIVGNDKTFVSLPNSPNYFRVIWTDSQTSLTGESWLKSEQIEVLNESR* |
JGI25133J35611_100140885 | F042574 | GAG | MEVGDLVKSPFTFFEGQLGLIIATDVWDEAVRGKWHIVKLFCNGEERTLCEYDMKVVKRCQENVKSDSNTLR* |
JGI25133J35611_100140887 | F046640 | AGGTGG | MMKAGDLVKVHLLNDLDWREALGVFMGYQGRKDGYTSHSFVFVEGKRLRFESMDVKAVK* |
JGI25133J35611_100140889 | F047913 | GAGG | MKAGDLLRHNGNHSLWLLLEVESEEYSETLLVASVKAGHTMWARQEVFKVVSKCQENVKSAPNDLQSPSQHVTL* |
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