NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25133J35611_10014088

Scaffold JGI25133J35611_10014088


Overview

Basic Information
Taxon OID3300002514 Open in IMG/M
Scaffold IDJGI25133J35611_10014088 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3361
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042574Metagenome158Y
F046640Metagenome151Y
F047913Metagenome149Y
F062181Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
JGI25133J35611_100140881F062181GGAMKVGDLVKLKYPRKPQHGGSGVIVGNDKTFVSLPNSPNYFRVIWTDSQTSLTGESWLKSEQIEVLNESR*
JGI25133J35611_100140885F042574GAGMEVGDLVKSPFTFFEGQLGLIIATDVWDEAVRGKWHIVKLFCNGEERTLCEYDMKVVKRCQENVKSDSNTLR*
JGI25133J35611_100140887F046640AGGTGGMMKAGDLVKVHLLNDLDWREALGVFMGYQGRKDGYTSHSFVFVEGKRLRFESMDVKAVK*
JGI25133J35611_100140889F047913GAGGMKAGDLLRHNGNHSLWLLLEVESEEYSETLLVASVKAGHTMWARQEVFKVVSKCQENVKSAPNDLQSPSQHVTL*
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