NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1011809

Scaffold JGI25132J35274_1011809


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1011809 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2143
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F004956Metagenome / Metatranscriptome417Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_10118091F005495N/AMLKWNGGSNTPNLNMKKYKILTDTMAGGSKVHAGDIVELPEHEGHALCGYGKAEVHTAKPKAEKQDRSIGLKTSKTKAPKTRAKK*
JGI25132J35274_10118092F001582N/AMPLESALDFNAYVDTTTGHGVTATFFEVQQTLWDDLPLIDTLFDIDSGASKNIDIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDKLRVDAITTDKGNVLKAETTFIVRTVEPDNTGLISLVLEEE*
JGI25132J35274_10118093F002716GAGGMSQFRLETELDMAGYLDINFGHGVSAVYTNSGSSSTINIILNNEYVEQEEGIGVEALKPIAYCRTIDVPNITFGNRLDVSAIKDTNGNILKAAQSYTVVNIQADRTGFSALMLEEI*
JGI25132J35274_10118095F004956AGGAGMKMISPDGKVSIEAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVENGNT*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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