NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1004487

Scaffold JGI25132J35274_1004487


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1004487 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3555
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F016811Metagenome / Metatranscriptome244Y
F024348Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_10044871F016811N/AECNMSDGQMIYDIGVRLAWKKKKGNGYVNMYLGTKDRPFQFVTRAKDLDTINRNPEMIAKMMAYVGATAKSVYDFYVKEEFYRKEISKSFAHKEEDYNKEFGE*
JGI25132J35274_10044877F013231N/AMINQRNYQNCKLIRKRIDLYLYEMSKIFTNIGIDSTEEEVEEAYRREAEYIELIAELDPVKADRLRASY*
JGI25132J35274_10044878F024348GAGMSIDNYYQDLTPDEADFILDIYRVVNELVLNNYPVTLVRLGYELGVKTEELSDYLPIIITILNKVEQEYEVR*
JGI25132J35274_10044879F008384GAGMRYDKEAIEREAMLSVQQGKLTEPLGRFILQRAIEIAGSAFVTAGNDELKQALVDAAVMRTCEKFLYYYQGGKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYVVCIEDGEKITRLQRYIKDSYLSEKL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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