Scaffold JGI25132J35274

Basic Information
Taxon OID	3300002483 Open in IMG/M
Scaffold ID	JGI25132J35274_1000420 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002483 Open in IMG/M

Scaffold ID

JGI25132J35274_1000420 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11448
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (31.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11448

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (31.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005132	Metagenome / Metatranscriptome	411	Y
F008384	Metagenome	334	Y
F016593	Metagenome / Metatranscriptome	246	Y
F024348	Metagenome / Metatranscriptome	206	Y
F027314	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10004201	F024348	N/A	CVLLTDEMINEYYEDLTEDEADFILDLYEVVNRLVYNGYPVTLVRLGFELGISAAELADHLPVILTILNKVEKEYAEIRQDFD*
JGI25132J35274_100042018	F027314	N/A	MACTVTLADIAYSCDDLGIGGILELHIANRSDADTALTYDTADRLVSAATAVTGVVELSFSNKDGFSVFSEVKTVNADGTTTTVPTISVELPKMDATKITALNDIAKGGAELVAFVKTAAGTYHVSGLDYGLYASTVDGNSGTGRGEKNRFQLTXTGEXNGLSYSIAEADFATATA*
JGI25132J35274_100042019	F004461	N/A	MSVTISNLPYGDRRPDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDSQSTASVGEKEMTVETYKWAFLNCKDALESSYRGLLLKQGQHNPXTMDAEFKDWVFDYFAKLSAQKALELAGTEITTELAADADVLDYDTNATISSSNILDLMEGAYGTMSDVMLAAVYGDADRDFKPSYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPNYYGMEVIHMASLPANEFVISAPQNIVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*
JGI25132J35274_10004202	F008384	AGTAG	MPRYDKTLIEKEAILSAQQGKITNELGKFILQRSIEIASSAFVTDGNKELQQALIDAAVMRTCEKFLYYYLQGKSAANLIISIIYSTMTNKIVSLNHSDVYGQKIKGYLTFIEDGETVTKLKRYIKDDYLSEKL*
JGI25132J35274_10004207	F005132	N/A	MVDVIFIDDNYLYKNFPLPKRMDRSALLSIIQLEQFTSIQDLLGTCLYERIEEHVKDQKLSTSEEGLFKLVKYTLAMYSAKAAISILRTEAARTKNEEAKQDQYILDTLSSTIDSKLSYINKRITNYILDNPILKAVATADGCNNDLFNEEDTYQGSVFYPKNGITDTTCEDGGVTYDL*
JGI25132J35274_10004209	F016593	GGA	MKRLKVGVVNTLSFVKLGDFTTNSFDVTLEKVVGSDSLTITNLTDLNNLDSCKDFIRINIDLVSNDLNGGEYLLTLTNNGKSYTFITEVEDYTITQSGSGIYADTVRFTDL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25132J35274_1000420

Overview

Ecosystem & Geography

Associated Families

Sequences