NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109953110

Scaffold B570J29032_109953110


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109953110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5988
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F006885Metagenome / Metatranscriptome362Y
F010599Metagenome / Metatranscriptome301Y
F028423Metagenome / Metatranscriptome191Y
F070870Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
B570J29032_10995311014F006885GAGMEYLLVIGLTLIASWSIIKISNKKRMMFLGKHKYRQSYIYEITKNIVPKQVFDKPKVITQSEKHIQKNMLKVVITEGKAYWILNNVFYTANAINGRVDEETIKPLDIENMSTKELDKMLSILDDLKQGVGPNDSGSTGNQRV*
B570J29032_10995311015F028423AGTAGGMDNLEKNELIQLITFYKQKLSDTELESLKLQLEINKLNSMILTLNKQPEKKTK*
B570J29032_1099531103F010599GAGMEMMLVIFFATLSLSFSIAYWATLNRLNKSNILMAELFIKNAALEELTSKIKDDTGISDDSIHKENFIKFLSDSRNWAFEYIETSQKTIKEVSEELKNRGLNDYSDKLLSLLPPTMEEK*
B570J29032_1099531105F070870GGAGMKKKTKVLVLIILSFLTAISLWAASNFKKMSNLDIFNIEED*
B570J29032_1099531107F003688N/AMYTDYMRKIVHSISSPKGFGVQIIDNDHFLTIKLDEKKFLYMGHDDKISALQYVIKLKKALEDCGAVVLVTREAIK*
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