NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29612_1000505

Scaffold B570J29612_1000505


Overview

Basic Information
Taxon OID3300002397 Open in IMG/M
Scaffold IDB570J29612_1000505 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3718
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032253Metagenome / Metatranscriptome180N
F085614Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
B570J29612_10005051F085614N/AIKLNVAKMPLELREKVIQAIVETDDKVRQMIQNIKLTFEKEVDSDDWPKGISEPTEDVELLEIKQTLNQALAFAHATMAILYNKRDDFKKINGRGINLNVFMLAMTAVNRLFRLAREKLELKNLDLRSVEGSEEARIFINKFLAMAGVKEIISTHSTV*
B570J29612_10005052F032253N/AMSQATETKSNDPRVIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPAAEQAQTKTAEMILQYESALLQDETLGKEDLITPIRFDVDSSNPAIISPEIRKIIATSLNELQATLYMIDMADQIISMISQLDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR*
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