| Basic Information | |
|---|---|
| Taxon OID | 3300002397 Open in IMG/M |
| Scaffold ID | B570J29612_1000384 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4120 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019600 | Metagenome / Metatranscriptome | 228 | N |
| F031767 | Metagenome / Metatranscriptome | 181 | N |
| F033705 | Metagenome / Metatranscriptome | 176 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J29612_10003842 | F031767 | GGA | MNNNSINQPKVIVVKRLERKPRQNYVKTLASLKSIIEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTSKSS* |
| B570J29612_10003843 | F019600 | N/A | MYTPDRNTSKLEVGYNLEKSLKEARETVYEGRKAVEDLTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSIAAYQRYNGDAILTSNLKALNKEILKTTGLVSSSDIEEMKEIIEDLANWKLNEQ* |
| B570J29612_10003844 | F033705 | N/A | MEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLVKEEANRLRNLKLKLNSIRKLVEVNQTNSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKISECILQIEIHLN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |