NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24503J29689_10017122

Scaffold JGI24503J29689_10017122


Overview

Basic Information
Taxon OID3300002392 Open in IMG/M
Scaffold IDJGI24503J29689_10017122 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 3 RNA2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1093
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022893Metagenome / Metatranscriptome212N
F023320Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
JGI24503J29689_100171221F022893N/AMKLKKAKKLTISYKVKVKHFEDFLLLCSYDKKDIDGFINLLSKCTEVDKEIFYNLRFADLIRFVDELVDSVDKEMYKAPKKAIKINERYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDERNSSVDEREKIMQNADVIDYMRLANFFLTWRDFLKKLKEIQKK*
JGI24503J29689_100171222F023320GAGGMKQYKALTFEVDLSGLGKEQWIQEELDYDTIAQKIIDTLIDVMREKDVEASSNLIQSLEPETKNGEIVIYADYYWKFIDKGVNGLMQSRDSEFSFKFIPASKKHALSIAKWLEFRGLATEFTTLADAYRVA
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