NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29643_100335

Scaffold B570J29643_100335


Overview

Basic Information
Taxon OID3300002389 Open in IMG/M
Scaffold IDB570J29643_100335 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2851
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035281Metagenome / Metatranscriptome172Y
F061803Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
B570J29643_1003351F061803N/AMXIEXSKQEAWKLIDAIVAYKKDYTVTGAVSKTFXNVTKXLKEIVKE*
B570J29643_1003359F035281AGGAGMMKFAFVFALMVLGSSGYAGECSTGNCTLRSRVVNVTREVIAVPVEVTRRTVEA

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