| Basic Information | |
|---|---|
| Taxon OID | 3300002242 Open in IMG/M |
| Scaffold ID | KVWGV2_10348608 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1768 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kolumbo Volcano, Greece | |||||||
| Coordinates | Lat. (o) | 36.5 | Long. (o) | 25.45 | Alt. (m) | Depth (m) | 494 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005537 | Metagenome / Metatranscriptome | 397 | Y |
| F008307 | Metagenome / Metatranscriptome | 335 | Y |
| F034344 | Metagenome | 175 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| KVWGV2_103486082 | F005537 | AGG | MSDNVKFISEIERLLKQKQDDYGHFDHTSYVMVGIMEKYLSIHNNQDIKIPIKFFGLFMIFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVIDENKTKRS* |
| KVWGV2_103486084 | F008307 | AGCAG | MVKVLKRSSLELAVDFEEIFDGASVEDATQKAHSQKMPSEFAKANITDNKLISANIKIIGEENDELKK* |
| KVWGV2_103486087 | F034344 | AGGA | MFVSVQEKLDKLVALTPDDQEKLSHYKSIVPAMIANCHKAHQSIPGWESCKPEIEAFKWFDGINIPVHGYIDLKGDKVIIEDKCKMPRRGIVKKDGTRSWF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |