| Basic Information | |
|---|---|
| Taxon OID | 3300002231 Open in IMG/M |
| Scaffold ID | KVRMV2_100038261 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from Santorini caldera mats, Greece - red mat |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25485 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Santorini caldera, Greece | |||||||
| Coordinates | Lat. (o) | 36.5 | Long. (o) | 25.45 | Alt. (m) | Depth (m) | 336 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003889 | Metagenome | 463 | Y |
| F031452 | Metagenome / Metatranscriptome | 182 | Y |
| F040584 | Metagenome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| KVRMV2_10003826112 | F040584 | N/A | MKNQSYIQGSPKKTSQGQGKHSKSNHGRKKLRGQGK* |
| KVRMV2_10003826119 | F031452 | GGAGG | MADFGDIVDGVFVLSEEQVKIRKYGFSPIKASGIPTVYHAGDVVNLPYSGGEKSSIEAXGXCWAAFATGT* |
| KVRMV2_10003826139 | F003889 | N/A | KRETNVMGPEYVAIALTAVVSAITAGGWTAGKILERQTERVKQAFEYINSQKRRIDLLEDQINRMPIDYVLKVDFLREIQGLHDHFKQINTKLDKLIEKLLTK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |