| Basic Information | |
|---|---|
| Taxon OID | 3300002186 Open in IMG/M |
| Scaffold ID | JGI24539J26755_10067665 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1058 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Norwegian Sea, Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 71.2008 | Long. (o) | 8.8666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004055 | Metagenome / Metatranscriptome | 455 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24539J26755_100676652 | F004055 | GAG | MEMELKQKIPQPHKTTNPKHREDYVFVEKPGEDFTALKLISGPFSSIVYKYGAVGIRPESEKRPDGTLPMQFDYDIIENKIEADIDSQEFINHIGDILVVLIDEKLKEDKLNAKN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |