NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24766J26685_10032192

Scaffold JGI24766J26685_10032192


Overview

Basic Information
Taxon OID3300002161 Open in IMG/M
Scaffold IDJGI24766J26685_10032192 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1246
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F025671Metagenome / Metatranscriptome200Y
F033037Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
JGI24766J26685_100321921F025671N/ACGEFCSECNEGSWQDEEAMKECQTHMVVLESREKAEVK*
JGI24766J26685_100321926F000263AGGAGMIPDTLELPAHLQRMVDAGVSGLDIMHGELKNLMLMAESDLAEASEQEQRSEEAMDSMVRTECEGRLDALVALYELTYQLSFAIGARDEA*
JGI24766J26685_100321927F033037GGAGMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDD
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